Oh yeah, I once thought of this idea!
Anyways:
Mort: i artichoked a ukelele hamster!
Skipper: O.o
Everyone else: ....
Skipper: O.o
Director: Skipper! It's your line next...!
Skipper: Sorry..wait what? Who changed the script? Since when did Mort say that?
Screenwriter: I just changed it recently.
Skipper:...oh.
Director: Okay! From the top! Again!

Also:
Director: Cue sleigh!
*Santa comes out of nowhere, riding his sleigh to the zoo animals pretending to be sad since they ruined Kidsmas* *sleigh accidentally hits Kowalski when landing*

Kowalski: OW!

Santa: oops. I misdirected my landing *glares at stagehand*

Director: Again!

Also:

*see Private with cocroaches all over him*
Private: I can't take it anymore!
King Julien, who is not on the set at this second: Bear with it.
Private: NO! *starts shaking violently to get the roaches off him*
Director: *sighs* Okay, if you can't bear having roaches crawling all over you, lets get some fake ones instead!

XD Okay, Okay, Lemme try!

Marlene: *steps on Booby-trap*
Skipper: *turns* MARLENE! *jumps*
(Skipper misses Marlene)
Skipper: Uh-Oh.
Marlene: *gets hit by fake fire* Skipper! That's 7 times already!

Director: SKIPPER! What was THAT!?!
Skipper: Ugh, can't we just move on without her!
Marlene: HEY!

Fred: Maybe I should save her.
Private: But you're suppose to be an idiot, Fred.
Fred: I know, but why can't I be a hero, ya know. New Pairing.
Director: We have to much pairings Fred, so-

Kowalski: How 'bout insert a Marski pairing! :D
Rico: MICOOOO!
Marlene: Maybe Kowalski can do a BETTER job!

Skipper: Hey Marlene, you're currently dead by the fire. So stop talking!
Marlene: It was FAKE fire!
Skipper: I starting to wish it wasn't!

Rico: Ooooooh! Heheheh.
Marlene: WHAT!?! *tackles him*
Skipper: GET HER OFF ME!
Private: Guuuuuuys! Stop it! *runs after them*

Icicle: *walks in with potato chips* What'd I miss?
Director: GET OFF THE SET ICICLE!

(While doing "Go Fish")

Skipper: Well I million-gazillion switched!
Julien: Well I switched up into infinity! So you have to shut-up a little.
Skipper: Ah, but what you didn't see coming is that I'm actually *rips costume* You!

Kowalski: ...
Private: ...
Julien: ...
Rico: ...Uh....
Director: ...Uh, Skipper...?
Skipper: What?
Director: Why do you look like that?
Skipper: Look like wh--*looks* WHAT! Who changed my costume!

?????: AHAHAHAHAA!
Skipper: HEY!
Joey: Eh, Don't look at me! It was Bada's idea!
Bada: Yup. it was me.
Bing: But we had Mort switch the outfits.

Director: Alright! But we have to shoot again!
Kitka: But I think this could work. I mean, Marlene isn't shown in this episode.
Director: She wasn't suppose to be in this episode! Skipper was suppose to change into a Julien costume, not Marlene!
Marlene: *walks in* Wha--Oh. you won't let me be in this episode, but you're fine when I'm in it with Skipper dressed as me!?!

Director: *face palm* Why me?

Behind The Scenes Of *Hot Ice*
Kowalski: Hello, People. This Is Behind The Scenes Of Hot Ice. This Is The Part Where My Brothers And I Will Be Sputtering Random Stuff. It's Gonna be Hilarious.

*Beep*

(Scene goes to on set where the behind the scenes camera is behind all the workers on set.)

Kowalski: ".....Zoo's Security Footage On Our Losinous Duo,Observe: *Kowalski On TV Screen*

”A Poem for Doris, The Dolphin

*Kowalski Turns To The TV And is Shocked Because He Wrote His Poem To Doris The Dolphin*

"We Swam As one, I Touched Your Gental Flipper, Then We Were done. You Wanted Someone, HIPPER!

"Sorry, Wrong Footage!"

*Tv Then Goes The Zoos Security Footage On Their Losinous Duo Cecil And Brick*

Cecil: ”...Get that necklace Right back from those Filthy birds,.....Why waste my genius On a Flock of dumb animals?”

Skipper: ”Dumb Animals?.....Private!,Hold on to that Necklace. If those Punks Want a Ticket to the Pony Show, W'll Gonna Give them a Real Ride.....”

*Kowalski,Rico, and Private Are Surprised by all this*

*Skipper Rolls his eyes at the rest For not understanding this*

Skipper: *Rolls His Eyes*"..To Jail?

Kowalski,Private, And Rico: ”Ohhhhhhhh”

Work Order:

Marlene: Like looking in a mirror? *holds up mirror*

Skipper: *turns head away from mirror*

Director: Cut! Skipper, look in the mirror!

Skipper: Why?

Director: Why not?

Skipper: Uh...

Marlene: *giggles* He has a zit!

Skipper: You *bleep*!

Private: Why the heck do people believe in 'Skilene'?

(In needle point)
Skipper: I'm afraid to get a shot.
Rico: GASP!
Kowalski: GASP!
Mort: GASP!...Actually I was suspecting that.

Director: CUT! Mort, where's Private!
Mort: In the bathroom.

B to the U to the M to the P

BUMP!

I've got nothing right now...

Blooper No. 12:
Miss Understanding -

Camera assistant: TAKE 1!
Director: And.... ACTION!!

Kid: Did you know that the only way to tell boy penguins from girl penguins is a DNA test?
Skipper: Never mind boys, kid's off his wingnut. We don't need a test to tell us we are 100% antarctic manly machismo.
Rico: Woo-ah! *High fives Skipper*
Alice: Look kid, all I know is that there are 3 males and 1 female; the birds know which is which.
Kowalski: .... wait.. WHAT?!
Director: CUT! Kowalski, what's the problem?
Kowalski: But we're all male penguins! There is no female!
Director: *facepalm* Ugh, that's the point of the episode Kowalski.
Kowalski: Yes, but we don't need DNA tests, I'm sure of it! Right Skipper?
Skipper: Yea! What are you creators thinking!
Director: You know what, just go by the script and let's try this again.

Camera Assistant: TAKE TWO!
Director: ACTION!!!

*The director sees Private asleep on the ground*
Director: CUT!! PRIVATE! WAKE UP!
*Private wakes up*
Private: Sorry sir!

Camera Assistant: TAKE 3!
Director: ACTION!

Kid: Did you know that the only way to tell boy penguins from girl penguins is a DNA test?
Skipper: Never mind boys, kid's off his... his um... dang I forgot! >_<
Director: CUT! Skipper! The line is, "Kid's off his wingnut!"
Skipper: Right, right.
Kowalski: Excuse me director, do I have any lines at all?
Rico: GRR!!
*Rico gets upset from waiting and throws a dynamite stick at the lights, making them collapse and fall onto the stage.*
Private: Oh dear!
*Private runs away, thinking that a light my fall on him and locks himself in the bathroom*

Camera Assistant: This may take a while.....